Resources
Bioinformatics tutorials (written by Jacob L. Steenwyk)
Phylogenetics/Phylogenomics
Five-step phylogenomics
Inferring a phylogeny, from sequences to tree
Trim multiple sequence alignments
Evaluate the accuracy of a multiple sequence alignment
Calculate gene-gene covariation
Summarize information content in phylogenomic data
Identifying signatures of rapid radiation
Prune phylogenies using a GUI
Other Science-related Resources
Statistics
Statistical thinking and analysis
Enrichment analysis
Multiple linear regression analysis in R
Kruskal-Wallis & post-hoc tests
Phylogenetics
Alignment format conversion
CIPRES Science Gateway
Estimating diversification rates
Introduction to Phylogenetic Biology
Genomics
The basics of SAMTools
Using CNVnator
R package for detecting recombination
Reciprocal best BLAST hit
Figure making
Top 50 ggplot2 Visualizations
Visualize correlations
PCA/clustering visualization
Colortools for large color palettes
Sequence Similarity Searches
Identify homologs using HMMs
Construct a BLAST database
Basic HMMER usage
Mental Health
Crisis Resources
National Suicide Prevention Lifeline: 1-800-273-TALK (8255)
Substance Abuse and Mental Health Services Administration: 1-800-662-HELP (4357)
National Domestic Violence Hotline: 1-800-799-SAFE (7233)
Lesbian, Gay, Bisexual and Transgender National Hotline: 1-888-843-4564